PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG264600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 87aa    MW: 9679.99 Da    PI: 9.3659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG264600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.1e-0914531554
                         HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         +iN+ +++L++llP+a + ++   s    L++++ YIksL
  Pavir.3KG264600.1.p 14 EINELIARLQTLLPSARRRGGSHASTTKLLKETCSYIKSL 53
                         7**************86777777****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.839153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-10376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-91370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-61453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSRRSRASV SEEEINELIA RLQTLLPSAR RRGGSHASTT KLLKETCSYI KSLHREVDDL  60
SDRLSDLMAT MDHNSPAAEI IRSLLR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581591e-109EU958159.1 Zea mays clone 1675661 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148242.12e-50uncharacterized protein LOC100281850
SwissprotA2X9L89e-44ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX09e-44ILI5_ORYSJ; Transcription factor ILI5
TrEMBLB6SZJ42e-50B6SZJ4_MAIZE; DNA binding protein
STRINGSi007662m5e-45(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.18e-26bHLH family protein